Human SpliceSite Scanner:
Function: Scanning splice sites on a set of human genomic sequences (FASTA format required)

Human SpliceSite Scanner
Project:
If mail result:
Strand to be scanned: forword reverse both
Target sequences (*FASTA format required) >seq1 gtgggtggctctgacgctccggctccgacccacaggcaccATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCAGACCTATGCCGTGCCCTTCATCCAGCCAGACCTGCGGCGAGAGGAGGCCGTCCAGCAGATGGCGGATGCCCTGCAGTACCTGCAGAAGGTCTCTGGAGACATCTTCAGCAGgtgggtgctgccactcacccccacctgatg >seq2 gtggggagcagcccagcctctgtgatcttctccatggcagGATCTCCCAGCAGGTAGAGCAGAGCCGGAGCCAGGTGCAGGCCATTGGAGAGAAGGTCTCCTTGGCCCAGGCCAAGATTGAGAAGATCAAGGGCAGCAAGAAGGCCATCAAGgtagtccccatacccctgtgtcctgaggct Or upload a sequence file:
Thresholds (bits): first second

Motifs for 3'-ss (acceptor) and 5'-ss (donor) splicing sites:

Citation:
C. Bi (2009) Human SpiceSite Scanner. Children's Mercy Hospitals: http://motif.cmh.edu/splicer.html

---

created on September 10, 2009 by Dr. Chengpeng Bi at CMH, Missouri, USA