PMC Server
  Motif-Finding Input  
Email address:
Molecular type: Algorithms:
Top motifs: Motif length:
Aligning: Output:

    Upload a FASTA file:
    Or copy & paste sequences as the example below:
         
  Population Markov Chain Monte Carlo  
Population size: Runs:

Publications
[1] C. Bi "DNA motif alignment by evolving a population of Markov chains." BMC Bioinformatics, 10, S13 (2009). [ PubMed link ]
[2] C. Bi "SEAM: A stochastic EM-type algorithm for motif-finding in biopolymer sequences." Journal of Bioinformatics and Computational Biology, 5, 47-77 (2007) [ PubMed abstract ]

Note: You simply click on the "submit" button to have a trial run using the default parameters and DNA sequences provided in the input panels. As an alternative, you may not receive your motif results by email unless you type your address correctly.


Last modified: August 12, 2009 by C. Bi